STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0039Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal; Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: aba:Acid345_4115 Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (420 aa)    
Predicted Functional Partners:
Acid_3816
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: aba:Acid345_3680 glutamate synthase (ferredoxin).
  
 
 0.971
Acid_2937
Pyruvate dehydrogenase (acetyl-transferring); PFAM: Transketolase, central region; Transketolase domain protein; KEGG: sru:SRU_0576 2-oxoisovalerate dehydrogenase, E1 component, alpha and beta subunit.
  
  
 0.884
Acid_3687
PFAM: dehydrogenase, E1 component; Transketolase, central region; Transketolase domain protein; KEGG: aba:Acid345_1786 dehydrogenase, E1 component.
  
  
 0.884
cobB
PFAM: Silent information regulator protein Sir2; KEGG: aae:aq_2170 hypothetical protein; Belongs to the sirtuin family. Class III subfamily.
   
 0.821
Acid_5307
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; catalytic domain of components of various dehydrogenase complexes; Transketolase, central region; KEGG: sru:SRU_1173 2-oxoglutarate dehydrogenase, E1 component.
  
 
 0.664
Acid_0179
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: afu:AF1719 acetolactate synthase small subunit.
  
  
 0.647
Acid_4539
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))., Phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase; malic enzyme domain protein; malic enzyme, NAD-binding; KEGG: gme:Gmet_1637 phosphate acetyltransferase.
  
  
 0.635
Acid_1072
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.613
Acid_0040
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aba:Acid345_0610 acyl-CoA dehydrogenase-like.
  
  
 0.590
Acid_0038
PFAM: Heparinase II/III family protein; KEGG: bth:BT4657 heparinase III protein.
       0.541
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.