STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0042Hypothetical protein; KEGG: mmu:239611 mucin 19. (1225 aa)    
Predicted Functional Partners:
Acid_0041
KEGG: rfr:Rfer_1694 integral membrane protein-like.
       0.504
Acid_0044
PFAM: type II secretion system protein; KEGG: aba:Acid345_1575 type II secretion system protein.
       0.480
Acid_0045
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: aba:Acid345_1576 type II secretion system protein E.
  
    0.479
Acid_0043
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: aba:Acid345_1574 outer membrane lipoprotein carrier protein LolA.
       0.477
Acid_0040
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: aba:Acid345_0610 acyl-CoA dehydrogenase-like.
       0.437
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.