STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0059PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2718 major facilitator superfamily (MFS_1) transporter. (424 aa)    
Predicted Functional Partners:
Acid_0060
KEGG: cch:Cag_1857 hypothetical protein.
       0.773
Acid_0061
PFAM: Allophanate hydrolase subunit 1; KEGG: mca:MCA0478 allophanate hydrolase, subunit 1.
       0.751
Acid_0063
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.639
Acid_0062
Urea amidolyase related protein; KEGG: rme:Rmet_0063 allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2.
       0.631
Acid_0064
KEGG: pae:PA1874 hypothetical protein.
       0.624
Acid_4041
PFAM: Heparinase II/III family protein; KEGG: yps:YPTB0499 hypothetical protein.
  
     0.565
Acid_5934
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: nar:Saro_1049 RhaT L-rhamnose-proton symport 2.
  
    0.552
Acid_0058
Aminotransferase; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase, class I and II; KEGG: dps:DP2938 probable aspartate aminotransferase.
       0.534
Acid_0254
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_A5911 major facilitator superfamily (MFS_1) transporter.
  
    0.495
Acid_7164
PFAM: Heparinase II/III family protein; KEGG: hypothetical protein.
  
     0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.