STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0062Urea amidolyase related protein; KEGG: rme:Rmet_0063 allophanate hydrolase subunit 2; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2. (279 aa)    
Predicted Functional Partners:
Acid_0061
PFAM: Allophanate hydrolase subunit 1; KEGG: mca:MCA0478 allophanate hydrolase, subunit 1.
 
 0.999
Acid_0063
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
 0.998
Acid_0866
TIGRFAM: urea amidolyase related protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; RimK domain protein ATP-grasp; KEGG: bxe:Bxe_B1384 UreA amidolyase-related protein.
 
 
0.978
Acid_0865
PFAM: Amidase; KEGG: gvi:glr0961 probable urea amidolyase.
   
 0.926
Acid_1858
PFAM: Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: aba:Acid345_0153 acetyl-CoA carboxylase, biotin carboxylase.
 
  
 0.911
Acid_7812
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
  
 0.911
Acid_0064
KEGG: pae:PA1874 hypothetical protein.
       0.773
Acid_7028
PFAM: Amidase; KEGG: gka:GK1392 glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
    
 0.772
Acid_3428
KEGG: gvi:glr0961 probable urea amidolyase.
   
 0.660
Acid_0059
PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B2718 major facilitator superfamily (MFS_1) transporter.
       0.631
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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