STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0129Response regulator receiver and unknown domain protein; KEGG: atc:AGR_C_4608 hypothetical protein. (131 aa)    
Predicted Functional Partners:
Acid_0130
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_1849 peptidase M20.
       0.693
Acid_0128
KEGG: tte:TTE2394 hypoxanthine-guanine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.510
Acid_0127
Hypothetical protein; KEGG: deh:cbdb_A722 putative hypoxanthine phosphoribosyl transferase with additional GAF motif.
       0.506
Acid_0124
KEGG: rba:RB6463 hypothetical protein.
       0.490
Acid_0125
PFAM: protein of unknown function DUF71, ATP-binding region; KEGG: aba:Acid345_3648 protein of unknown function DUF71, ATPase.
       0.490
Acid_0126
KEGG: tel:tll1975 hypothetical protein.
       0.490
Acid_0123
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sth:STH612 putative cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.452
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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