STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0140PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: hch:HCH_00869 chitinase. (694 aa)    
Predicted Functional Partners:
Acid_6569
beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20; KEGG: aba:Acid345_3493 beta-N-acetylhexosaminidase.
 
  
 0.947
Acid_3086
beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 20; KEGG: aba:Acid345_3493 beta-N-acetylhexosaminidase.
 
  
 0.946
Acid_2220
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: aba:Acid345_4564 glycoside hydrolase, family 3-like.
   
 
 0.901
Acid_3288
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: eba:ebA3075 hypothetical protein.
   
    0.727
Acid_2980
KEGG: sco:SCO7476 secreted protein.
  
   
 0.692
Acid_4812
PFAM: condensation domain protein; KEGG: pae:PA3329 hypothetical protein.
  
   
 0.626
Acid_2816
PFAM: glycoside hydrolase, family 16; glycoside hydrolase, family 10; KEGG: sde:Sde_0323 TonB-like.
 
     0.611
Acid_1351
KEGG: aba:Acid345_3971 putative secreted protein.
  
     0.608
Acid_0141
Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
       0.541
Acid_4678
KEGG: tfu:Tfu_1230 hypothetical protein.
  
    0.502
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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