Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0171PFAM: protein of unknown function DUF362; KEGG: chy:CHY_2397 iron-sulfur cluster-binding protein. (382 aa)    
Predicted Functional Partners:
Acid_0170
Hypothetical protein.
       0.773
Acid_0172
KEGG: rba:RB4201 hypothetical protein.
       0.773
Acid_5629
KEGG: lac:LBA1470 hypothetical protein.
  
     0.763
Acid_3796
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins.
  
     0.740
Acid_3127
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_1694 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.729
Acid_3788
Hypothetical protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins.
  
     0.727
Acid_6258
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family-like protein; KEGG: sat:SYN_00815 dolichyl-phosphate-mannose-protein mannosyltransferase proteins.
  
     0.716
Acid_5711
Hypothetical protein; KEGG: rba:RB5247 putative WD-repeat containing protein.
  
     0.712
Acid_7758
KEGG: mac:MA1904 hypothetical protein.
  
     0.708
Acid_1229
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: psb:Psyr_4684 biotin synthesis protein BioC.
  
     0.704
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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