Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Acid_0189KEGG: xcb:XC_2022 hypothetical protein. (172 aa)    
Predicted Functional Partners:
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
  
 0.980
Acid_0030
PFAM: UvrD/REP helicase; KEGG: sru:SRU_1806 probable ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
 
 0.956
Acid_1693
PFAM: UvrD/REP helicase; KEGG: gka:GK1383 hypothetical protein.
  
 0.946
Acid_1906
DNA helicase/exodeoxyribonuclease V, subunit A; PFAM: UvrD/REP helicase; KEGG: btk:BT9727_1041 ATP-dependent nuclease, subunit A; Belongs to the helicase family. UvrD subfamily.
  
 0.946
Acid_7406
PFAM: DNA polymerase B, exonuclease; DNA polymerase B region; SMART: DNA-directed DNA polymerase B; KEGG: gme:Gmet_3187 DNA polymerase B, exonuclease.
   
 0.946
Acid_0740
ATP-dependent DNA helicase, RecQ family; KEGG: nfa:nfa2960 putative ATP-dependent DNA helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
 0.918
Acid_0959
KEGG: aba:Acid345_3541 ATP-dependent DNA helicase, RecQ family; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
 0.918
Acid_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.891
Acid_3907
PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: dvu:DVU2085 SNF2 family protein.
  
 0.839
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.831
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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