STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0192PFAM: dihydrodipicolinate synthetase; KEGG: sme:SMb20299 putative N-acetylneuraminate lyase subunit protein. (300 aa)    
Predicted Functional Partners:
Acid_6981
PFAM: dihydrodipicolinate reductase; KEGG: aba:Acid345_2492 dihydrodipicolinate reductase; Belongs to the DapB family.
 
 
 0.921
Acid_2246
PFAM: N-acetylneuraminic acid synthase, N-terminal domain; KEGG: aba:Acid345_2841 N-acetylneuraminate synthase.
   
 
 0.901
Acid_0193
Exo-alpha-sialidase; KEGG: sma:SAV5606 neuramidase.
 
   
 0.884
Acid_0194
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_3218 hypothetical protein.
       0.773
Acid_4049
PFAM: dihydrodipicolinate synthetase; KEGG: bld:BLi01902 dihydrodipicolinate synthase; RBL01925; Belongs to the DapA family.
  
     0.768
Acid_0191
PFAM: major facilitator superfamily MFS_1; KEGG: bfs:BF3708 putative transport related, membrane protein.
  
  
 0.734
Acid_6983
KEGG: aba:Acid345_2490 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase, NAD - binding; Semialdehyde dehydrogenase, dimerisation region; Belongs to the aspartate-semialdehyde dehydrogenase family.
 
 
 0.729
Acid_0190
KEGG: gvi:glr3188 unknown protein.
       0.705
Acid_0195
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: ttj:TTHA1580 transcriptional regulator, GntR family.
     
 0.579
gatC
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
  
 0.577
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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