Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0239PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: psb:Psyr_4958 AAA ATPase, central region:Clp, N terminal:Clp, N terminal; Belongs to the ClpA/ClpB family. (890 aa)    
Predicted Functional Partners:
Acid_0238
PFAM: protein of unknown function DUF1305; KEGG: psb:Psyr_4957 protein of unknown function DUF1305.
 
  
 0.941
Acid_0240
PFAM: Rhs element Vgr protein; Gp5 domain protein; KEGG: pae:PA2685 hypothetical protein.
 
  
 0.932
clpP
ATP-dependent Clp protease proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
 
 0.922
Acid_0237
PFAM: protein of unknown function DUF879; KEGG: psb:Psyr_4956 protein of unknown function DUF879.
 
  
 0.910
Acid_0236
PFAM: protein of unknown function DUF1316; KEGG: hch:HCH_04250 hypothetical protein.
 
  
 0.903
Acid_0235
PFAM: ImpA domain protein; KEGG: cvi:CV3963 hypothetical protein.
 
  
 0.900
Acid_0232
PFAM: protein of unknown function DUF877; KEGG: hypothetical protein.
  
 0.895
Acid_0234
PFAM: virulence protein, SciE type; KEGG: pae:PA0086 hypothetical protein.
 
    0.894
Acid_0231
PFAM: Uncharacterised conserved protein UCP028301; KEGG: csa:Csal_2268 uncharacterised conserved protein UCP028301.
 
  
 0.880
Acid_0233
PFAM: protein of unknown function DUF796; KEGG: bpm:BURPS1710b_A2076 hypothetical protein.
 
  
 0.876
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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