Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Acid_0271PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2000 glycosyl transferase, group 1. (400 aa)    
Predicted Functional Partners:
Acid_0272
KEGG: tbd:Tbd_0292 asparagine synthase, glutamine-hydrolyzing; TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase.
 
     0.810
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
    
 
 0.694
Acid_4662
TIGRFAM: eight transmembrane protein EpsH; KEGG: gsu:GSU1979 hypothetical protein.
  
     0.678
Acid_6340
TIGRFAM: eight transmembrane protein EpsH; KEGG: gme:Gmet_1503 hypothetical protein.
  
     0.677
Acid_0454
TIGRFAM: eight transmembrane protein EpsH; KEGG: dde:Dde_0847 hypothetical protein.
  
     0.670
Acid_0270
Diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: sensory box/GGDEF domain/EAL domain protein.
 
     0.627
Acid_0273
Hypothetical protein.
       0.605
Acid_1648
PFAM: lipopolysaccharide biosynthesis; KEGG: sat:SYN_00780 chain length determinant protein, Wzz-like protein.
 
  
 0.596
Acid_6302
PFAM: glycosyl transferase, family 2; KEGG: gme:Gmet_2879 glycosyl transferase, family 2.
 
 
    0.576
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.552
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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