STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0336RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: ade:Adeh_2888 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (210 aa)    
Predicted Functional Partners:
Acid_0335
Hypothetical protein.
       0.598
Acid_0334
PFAM: transglutaminase domain protein; KEGG: aba:Acid345_2146 transglutaminase-like.
       0.529
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aba:Acid345_1653 flagellar hook-basal body complex protein (FliE).
   
   0.519
Acid_0337
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
       0.497
Acid_0338
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: bba:Bd3406 flagellar basal-body rod protein.
       0.497
Acid_0343
ATPase, FliI/YscN family; KEGG: sat:SYN_01473 flagellum-specific ATP synthase; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase.
   
   0.410
Acid_0341
PFAM: flagellar motor switch protein FliG; KEGG: aba:Acid345_1651 flagellar motor switch protein FliG.
   
 
 0.409
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.