STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0364Amidase, hydantoinase/carbamoylase family; KEGG: ath:At5g43600 N-carbamyl-L-amino acid hydrolase, putative; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein. (413 aa)    
Predicted Functional Partners:
Acid_0363
PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; KEGG: dra:DR1152 hypothetical protein.
 
 
 0.994
Acid_0358
KEGG: gox:GOX0903 hypothetical protein.
   
 0.960
allB
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.917
Acid_2515
PFAM: aminotransferase, class V; KEGG: aba:Acid345_0127 alanine--glyoxylate transaminase.
 
 
  0.834
Acid_0451
PFAM: FAD linked oxidase domain protein; KEGG: bcl:ABC2177 glycolate oxidase subunit.
    
 0.811
Acid_1055
PFAM: FAD linked oxidase domain protein; KEGG: gka:GK1532 glycolate oxidase subunit.
    
 0.811
Acid_4485
PFAM: FAD linked oxidase domain protein; KEGG: plt:Plut_0570 D-lactate dehydrogenase (cytochrome).
    
 0.811
Acid_3107
KEGG: ade:Adeh_2998 malate synthase A / isocitrate lyase; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.
    
 0.806
Acid_5702
KEGG: ade:Adeh_2998 malate synthase A / isocitrate lyase; TIGRFAM: malate synthase A; PFAM: malate synthase; Belongs to the malate synthase family.
    
 0.806
Acid_1067
PFAM: dihydrodipicolinate synthetase; KEGG: aba:Acid345_2666 dihydrodipicolinate synthetase; Belongs to the DapA family.
    
 0.804
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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