STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0424KEGG: aba:Acid345_1484 hypothetical protein. (757 aa)    
Predicted Functional Partners:
Acid_1095
KEGG: aba:Acid345_4687 putative anti-sigma factor.
  
    0.635
Acid_7900
PFAM: regulatory protein, MarR; KEGG: aba:Acid345_2951 transcriptional regulator, MarR family.
  
   
 0.610
Acid_7899
PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: bur:Bcep18194_B1302 Cl-channel, voltage gated.
  
     0.607
Acid_0160
KEGG: mlo:mlr1763 hypothetical protein.
  
     0.596
Acid_0818
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: deh:cbdb_A1296 carbohydrate kinase, PfkB family; Belongs to the carbohydrate kinase PfkB family.
   
    0.582
Acid_0578
Kumamolisin. Serine peptidase. MEROPS family S53; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: bxe:Bxe_B1994 kumamolisin.
  
     0.577
Acid_1096
PFAM: metallophosphoesterase; KEGG: aba:Acid345_4689 metallophosphoesterase.
  
     0.575
Acid_3112
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; Hyalin; KEGG: aba:Acid345_2708 type I phosphodiesterase/nucleotide pyrophosphatase.
  
   0.547
Acid_6572
KEGG: aba:Acid345_1897 hypothetical protein.
  
     0.509
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
  
 0.508
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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