Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0488Glycosylasparaginase precursor. Threonine peptidase. MEROPS family T02; PFAM: peptidase T2, asparaginase 2; KEGG: aba:Acid345_0602 peptidase T2, asparaginase 2. (400 aa)    
Predicted Functional Partners:
Acid_7657
KEGG: bcn:Bcen_3021 hypothetical protein.
  
    0.669
cysN
Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
    0.659
Acid_0487
Hypothetical protein; KEGG: aba:Acid345_1201 tetratricopeptide repeat protein.
       0.538
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
  
  
 0.519
Acid_7192
PFAM: nuclear protein SET; SMART: SET-related domain protein; KEGG: cel:C26E6.9b Set (trithorax/polycomb) domain containing protein 2, isoform b.
    
 0.466
Acid_5022
PFAM: peptidase M28; KEGG: ccr:CC2840 hypothetical protein.
  
    0.452
Acid_0489
KEGG: aba:Acid345_3004 chaperone protein HtpG.
       0.439
Acid_0490
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_3003 Fe-S-cluster-containing hydrogenase.
       0.439
Acid_0491
PFAM: Polysulphide reductase, NrfD; KEGG: aba:Acid345_3002 polysulphide reductase, NrfD.
       0.439
Acid_0492
KEGG: aba:Acid345_3001 conserved hypothetical protein, transmembrane prediction.
       0.439
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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