STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0490PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aba:Acid345_3003 Fe-S-cluster-containing hydrogenase. (999 aa)    
Predicted Functional Partners:
Acid_0491
PFAM: Polysulphide reductase, NrfD; KEGG: aba:Acid345_3002 polysulphide reductase, NrfD.
 
 
 0.998
Acid_0494
KEGG: noc:Noc_1242 hypothetical protein.
 
 
 0.994
Acid_0497
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
 
 0.994
Acid_0489
KEGG: aba:Acid345_3004 chaperone protein HtpG.
 
 
 0.993
Acid_0492
KEGG: aba:Acid345_3001 conserved hypothetical protein, transmembrane prediction.
 
 
 0.991
Acid_0493
KEGG: aba:Acid345_3000 hypothetical protein.
 
 
 0.991
Acid_0399
PFAM: Polysulphide reductase, NrfD; KEGG: dde:Dde_2935 molybdopterin oxidoreductase, transmembrane subunit, putative.
  
 
 0.976
Acid_4205
PFAM: Polysulphide reductase, NrfD; KEGG: aba:Acid345_2602 polysulphide reductase, NrfD.
  
 
 0.976
Acid_6925
KEGG: aba:Acid345_4239 nickel-dependent hydrogenase, membrane protein.
  
 
 0.976
Acid_0402
KEGG: dde:Dde_2932 hypothetical protein.
 
 
 0.972
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.