STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0530PFAM: Stage II sporulation E family protein; KEGG: aba:Acid345_2413 anti-sigma regulatory factor, serine/threonine protein kinase and phosphatase. (344 aa)    
Predicted Functional Partners:
Acid_0527
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2416 anti-sigma-factor antagonist.
 
 
 0.964
Acid_0528
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: aba:Acid345_2415 anti-sigma-factor antagonist.
 
 
 0.964
Acid_0531
Histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: aba:Acid345_2412 histidine kinase.
 
  
 0.929
Acid_0529
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: aba:Acid345_2414 putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
    
0.787
Acid_0337
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.762
Acid_0341
PFAM: flagellar motor switch protein FliG; KEGG: aba:Acid345_1651 flagellar motor switch protein FliG.
   
    0.762
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aba:Acid345_2930 flagellar hook-associated protein.
   
    0.762
Acid_7451
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.762
Acid_1856
Serine phosphatase; PFAM: Forkhead-associated protein; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_2718 serine phosphatase.
  
 
 0.759
Acid_3432
Serine phosphatase; PFAM: Forkhead-associated protein; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rba:RB7190 conserved hypothetical protein, putative regulatory protein.
  
 
 0.727
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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