STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0619PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; KEGG: dvu:DVUA0071 glycosyl transferase, group 1/2 family protein. (1063 aa)    
Predicted Functional Partners:
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
  
  
 0.876
Acid_5707
PFAM: transferase hexapeptide repeat containing protein; WxcM domain protein, C-terminal domain protein; KEGG: lipopolysaccharide biosynthesis protein.
 
  
 0.866
Acid_0620
Hypothetical protein.
       0.773
Acid_7732
DNA topoisomerase III; KEGG: cac:CAC3567 topoisomerase B; TIGRFAM: ATP-dependent DNA helicase, RecQ family; DNA topoisomerase III; PFAM: helicase domain protein; HRDC domain protein; TOPRIM domain protein; DEAD/DEAH box helicase domain protein; DNA topoisomerase, type IA, central domain protein; SMART: DNA topoisomerase I, ATP-binding; DNA topoisomerase I, DNA-binding; Toprim sub domain protein; DEAD-like helicases-like.
   
 
 0.680
Acid_4648
PFAM: glycosyl transferase, family 2; KEGG: bpm:BURPS1710b_A1381 glycosyl transferase, group 2 family protein.
 
  
 0.674
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
  
 0.659
Acid_6227
PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; KEGG: bha:BH3366 spore coat polysaccharide synthesis (dTDP-4-dehydrorhamnose 3,5-epimerase).
  
  
 0.650
Acid_4656
PFAM: transferase hexapeptide repeat containing protein; KEGG: rsp:RSP_7375 acetyltransferase (isoleucine patch superfamily).
 
  
 0.620
Acid_7476
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: eca:ECA4208 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.594
Acid_1377
PFAM: polysaccharide biosynthesis protein; KEGG: rru:Rru_A3093 membrane protein involved in the export of O-antigen and teichoic acid-like.
 
  
 0.580
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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