Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0652PFAM: transcriptional regulator PadR family protein; KEGG: gvi:gll1202 hypothetical protein. (117 aa)    
Predicted Functional Partners:
Acid_0650
PFAM: alpha/beta hydrolase fold; KEGG: gvi:gll1310 hypothetical protein.
 
     0.812
Acid_0651
Hypothetical protein.
       0.773
Acid_1351
KEGG: aba:Acid345_3971 putative secreted protein.
  
     0.565
Acid_1350
KEGG: aba:Acid345_3970 hypothetical protein.
  
     0.545
Acid_0648
PFAM: ParB domain protein nuclease; KEGG: lxx:Lxx25247 chromosome partitioning protein.
       0.493
Acid_0649
Hypothetical protein.
       0.493
Acid_0653
Hypothetical protein; KEGG: gme:Gmet_3527 IS204/IS1001/IS1096/IS1165 transposase.
       0.479
Acid_0646
PFAM: IstB domain protein ATP-binding protein; KEGG: mta:Moth_2240 IstB-like ATP-binding protein.
       0.450
Acid_0647
Hypothetical protein; KEGG: yps:pYV0022 putative transposase.
       0.450
Acid_0645
Hypothetical protein.
       0.444
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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