STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0665KEGG: rpc:RPC_0743 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Acid_0666
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
       0.566
Acid_5199
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ret:RHE_CH02689 putative glyoxalase protein.
  
     0.550
Acid_2290
PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr2176 probable hydrolase.
  
   
 0.502
Acid_5499
Hypothetical protein.
  
     0.486
Acid_1351
KEGG: aba:Acid345_3971 putative secreted protein.
  
     0.483
Acid_1350
KEGG: aba:Acid345_3970 hypothetical protein.
  
     0.471
Acid_2371
PFAM: high-affinity nickel-transporter; KEGG: gvi:glr3327 hypothetical protein.
  
     0.441
Acid_5270
PFAM: NmrA family protein; KEGG: aba:Acid345_1115 NmrA-like.
 
    0.425
Acid_3231
Methyltransferase type 12; PFAM: O-methyltransferase, family 2; Methyltransferase type 11; Methyltransferase type 12; KEGG: aba:Acid345_1171 hypothetical protein.
  
     0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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