STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0697PFAM: amidohydrolase 2; KEGG: rba:RB9860 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Acid_1511
PFAM: amidohydrolase 2; KEGG: atc:AGR_C_5105 conserved hypothetical protein.
  
  
 
0.922
Acid_5959
PFAM: protein of unknown function DUF718; KEGG: tac:Ta0744 conserved hypothetical protein.
 
  
 0.829
Acid_0698
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pca:Pcar_3124 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
       0.596
Acid_3901
KEGG: xcb:XC_2479 hypothetical protein.
  
     0.563
Acid_5349
KEGG: cpe:CPE1875 hypothetical protein.
  
     0.563
Acid_0696
PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: mag:amb3321 hypothetical 217 kDa protein Y4HQ.
       0.527
Acid_0535
Hypothetical protein.
  
     0.520
Acid_0695
KEGG: aba:Acid345_0291 cytochrome c, class I.
       0.501
Acid_0699
TIGRFAM: TonB family protein; KEGG: aba:Acid345_1862 TonB-like protein.
       0.475
Acid_4210
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: ret:RHE_PF00304 probable alpha-L-fucosidase protein.
 
     0.470
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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