Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0701PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Acid_4919
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
 
     0.976
Acid_6142
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3635 probable secreted glycosyl hydrolase.
  
     0.773
Acid_2605
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.771
Acid_2087
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.770
Acid_3088
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.770
Acid_6296
PFAM: oxidoreductase domain protein; KEGG: bth:BT2158 putative dehydrogenase and related proteins.
  
     0.770
Acid_2081
PFAM: protein of unknown function DUF1080; KEGG: rba:RB1109 putative multi-domain protein.
  
     0.769
Acid_3246
PFAM: oxidoreductase domain protein; KEGG: rba:RB2833 conserved hypothetical protein, putative NADH-dependent dyhydrogenase.
  
     0.769
Acid_4241
PFAM: oxidoreductase domain protein; KEGG: bth:BT4448 putative dehydrogenase.
  
     0.769
Acid_2979
PFAM: protein of unknown function DUF1080; KEGG: rba:RB9439 putative large multi-functional protein.
  
     0.768
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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