Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
Acid_0709PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dsy:DSY0411 hypothetical protein. (436 aa)    
Predicted Functional Partners:
Acid_7660
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA; KEGG: gka:GK1422 dihydropyrimidine dehydrogenase; TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
 
 0.964
Acid_0708
PFAM: microcompartments protein; KEGG: dsy:DSY4996 hypothetical protein.
 
  
 0.951
Acid_3510
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ade:Adeh_2406 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 
 0.835
nuoI1
NADH-quinone oxidoreductase, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
 0.764
nuoI2
4Fe-4S ferredoxin, iron-sulfur binding domain protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.
   
 
 0.764
Acid_0710
KEGG: rba:RB7999 hypothetical protein; Belongs to the DapA family.
       0.709
Acid_0711
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein.
       0.709
Acid_0323
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: chy:CHY_0688 ethanolamine utilization protein EutN.
 
   
 0.692
Acid_0322
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN.
 
   
 0.673
Acid_0321
PFAM: microcompartments protein; KEGG: sbo:SBO_2472 detox protein.
 
  
 0.655
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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