Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Acid_0741PFAM: beta-lactamase domain protein; KEGG: gka:GK1756 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Acid_0742
KEGG: ade:Adeh_0878 hypothetical protein.
 
     0.624
Acid_0350
KEGG: mfa:Mfla_1193 hypothetical protein.
  
   
 0.521
Acid_7531
KEGG: ade:Adeh_3189 hypothetical protein.
  
     0.481
Acid_3083
KEGG: aba:Acid345_1037 hypothetical protein.
  
     0.476
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.463
Acid_6915
PFAM: protein of unknown function DUF892; KEGG: bja:bll3758 Mn-containing catalase.
  
     0.453
Acid_4889
KEGG: pac:PPA2220 conserved protein (PRC-barrel domain).
  
     0.444
Acid_7532
KEGG: bxe:Bxe_B0005 hypothetical protein.
  
     0.438
Acid_5777
PFAM: protein of unknown function DUF892; KEGG: nwi:Nwi_2664 protein of unknown function DUF892.
  
     0.435
Acid_5565
PFAM: protein of unknown function DUF892; KEGG: atc:AGR_L_1433 hypothetical protein.
  
     0.434
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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