Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Acid_0772PFAM: TPR repeat-containing protein; peptidase M1, membrane alanine aminopeptidase; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_2536 peptidase M1, membrane alanine aminopeptidase. (655 aa)    
Predicted Functional Partners:
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.812
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.745
Acid_1130
PFAM: TonB-dependent receptor; KEGG: aba:Acid345_1415 TonB-dependent receptor.
  
     0.735
Acid_0035
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.708
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.691
Acid_2567
KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.686
Acid_3368
Hypothetical protein; KEGG: aba:Acid345_1501 TonB-dependent receptor.
  
     0.686
Acid_3977
KEGG: aba:Acid345_0428 hypothetical protein.
  
     0.685
Acid_6994
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.684
Acid_4564
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.683
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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