Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0774TIGRFAM: TonB family protein; KEGG: aba:Acid345_0810 TonB-like protein. (543 aa)    
Predicted Functional Partners:
Acid_0773
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aba:Acid345_3328 haloacid dehalogenase-like hydrolase.
       0.773
Acid_0775
PFAM: peptidase S16, lon domain protein; KEGG: sru:SRU_1204 ATP-dependent protease La domain protein.
       0.773
Acid_1280
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
     0.683
Acid_1281
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_0149 MotA/TolQ/ExbB proton channel.
 
 
 0.587
Acid_4018
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_2675 TonB-dependent receptor.
  
   0.584
Acid_4169
Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; KEGG: aba:Acid345_0375 periplasmic sensor signal transduction histidine kinase.
  
     0.573
Acid_0776
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cya:CYA_0936 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.559
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.559
Acid_0778
Glycerate 2-kinase; PFAM: MOFRL domain protein; KEGG: dvu:DVU0765 hydroxypyruvate reductase, putative.
       0.559
Acid_0779
PFAM: Tetratricopeptide TPR_2 repeat protein.
       0.559
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.