Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0779PFAM: Tetratricopeptide TPR_2 repeat protein. (115 aa)    
Predicted Functional Partners:
Acid_0776
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cya:CYA_0936 oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.773
Acid_0778
Glycerate 2-kinase; PFAM: MOFRL domain protein; KEGG: dvu:DVU0765 hydroxypyruvate reductase, putative.
       0.773
Acid_0773
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aba:Acid345_3328 haloacid dehalogenase-like hydrolase.
       0.559
Acid_0774
TIGRFAM: TonB family protein; KEGG: aba:Acid345_0810 TonB-like protein.
       0.559
Acid_0775
PFAM: peptidase S16, lon domain protein; KEGG: sru:SRU_1204 ATP-dependent protease La domain protein.
       0.559
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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