STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0789KEGG: aba:Acid345_1031 hypothetical protein. (477 aa)    
Predicted Functional Partners:
Acid_0791
KEGG: aba:Acid345_1029 hypothetical protein.
       0.799
Acid_0790
KEGG: xla:431898 hypothetical protein MGC83886.
       0.775
Acid_0792
KEGG: aba:Acid345_1028 putative transmembrane transcriptional regulator.
  
    0.751
Acid_0793
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_1027 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.748
Acid_2840
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.739
Acid_4564
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.736
Acid_3127
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_1694 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.734
Acid_4962
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4310 sugar phosphate isomerase/epimerase.
  
     0.730
Acid_2973
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: aba:Acid345_1694 glyoxalase/bleomycin resistance protein/dioxygenase.
  
    0.726
Acid_0035
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.723
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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