Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0802PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: rme:Rmet_3665 peptidase M20. (456 aa)    
Predicted Functional Partners:
Acid_0801
KEGG: rme:Rmet_5384 hypothetical protein.
       0.570
Acid_0803
KEGG: dar:Daro_3332 hypothetical protein.
       0.505
Acid_1582
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase C-terminal domain protein; KEGG: ccr:CC0940 acylase, putative.
  
   
 0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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