Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
xylBTIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: cac:CAC2612 xylulose kinase. (493 aa)    
Predicted Functional Partners:
xylA
KEGG: bxe:Bxe_B2622 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
 
 
 0.979
Acid_3191
PFAM: ribulose-phosphate 3-epimerase; KEGG: aba:Acid345_0074 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.972
Acid_1230
L-ribulose 5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein; KEGG: aba:Acid345_0325 class II aldolase/adducin-like.
 
 0.961
Acid_4909
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB1210 probable hexulose-6-phosphate isomerase.
 
 
 0.678
Acid_5520
PFAM: FAD dependent oxidoreductase; KEGG: gsu:GSU2761 FAD-dependent glycerol-3-phosphate dehydrogenase subunit; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.676
Acid_2773
PFAM: AP endonuclease 2 domain protein; Xylose isomerase domain protein TIM barrel; KEGG: gka:GK2111 hypothetical protein.
 
 
 0.622
Acid_4076
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase.
 
 
 0.601
Acid_0027
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: oih:OB3419 hypothetical protein.
 
 
 0.597
Acid_5954
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sso:SSO3029 hypothetical protein.
 
 
 0.590
Acid_7826
Inner-membrane translocator; PFAM: periplasmic binding protein/LacI transcriptional regulator; inner-membrane translocator; KEGG: sco:SCO2747 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.561
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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