STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0807PFAM: Allergen V5/Tpx-1 family protein; KEGG: nha:Nham_3051 hypothetical protein. (424 aa)    
Predicted Functional Partners:
Acid_5079
Hypothetical protein.
  
 
  0.693
Acid_5957
PFAM: glycoside hydrolase family 2, sugar binding; KEGG: bth:BT4145 hypothetical protein.
  
 
  0.693
Acid_6001
PFAM: Kelch repeat-containing protein; Kelch repeat protein; KEGG: aba:Acid345_4136 Kelch repeat protein.
  
 
  0.693
Acid_5710
PFAM: WD-40 repeat protein; KEGG: ava:Ava_1556 WD-40 repeat.
 
      0.653
Acid_7045
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; protease-associated PA domain protein; KEGG: dge:Dgeo_2222 peptidase S8 and S53, subtilisin, kexin, sedolisin.
  
 
 0.472
Acid_4082
KEGG: aba:Acid345_0606 hypothetical protein.
  
     0.438
Acid_0806
Hypothetical protein.
       0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.