STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0842PFAM: protein of unknown function DUF1552; KEGG: rba:RB11884 hypothetical protein. (447 aa)    
Predicted Functional Partners:
Acid_0841
PFAM: Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB11886 hypothetical protein-signal peptide and transmembrane prediction.
 
     0.940
Acid_2031
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB588 hypothetical protein-transmembrane prediction.
 
     0.778
Acid_4307
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB7033 similar to filamin.
 
     0.778
Acid_5827
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB588 hypothetical protein-transmembrane prediction.
 
     0.778
Acid_1243
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12024 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
Acid_2097
PFAM: protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; KEGG: rba:RB395 hypothetical protein-signal peptide and transmembrane prediction.
 
     0.774
Acid_0929
PFAM: cytochrome c, class I; protein of unknown function DUF1585; Protein of unknown function DUF1587; Protein of unknown function DUF1588; Protein of unknown function DUF1592; Protein of unknown function DUF1595; KEGG: rba:RB12024 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.773
Acid_5711
Hypothetical protein; KEGG: rba:RB5247 putative WD-repeat containing protein.
  
     0.767
Acid_5708
PFAM: protein of unknown function DUF1501; KEGG: rba:RB5255 hypothetical protein.
  
     0.760
Acid_5709
PFAM: Ig domain protein, group 2 domain protein; protein of unknown function DUF1549; KEGG: rba:RB5253 similar to S-layer related protein.
  
     0.759
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.