Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0844PFAM: oxidoreductase domain protein; KEGG: rba:RB12564 probable NADH-dependent dehydrogenase homolog. (425 aa)    
Predicted Functional Partners:
Acid_0753
PFAM: oxidoreductase domain protein; KEGG: rba:RB3442 probable dehydrogenase.
  
     0.773
Acid_0023
PFAM: oxidoreductase domain protein; KEGG: rba:RB10503 probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase.
  
     0.769
Acid_6145
PFAM: oxidoreductase domain protein; KEGG: rba:RB10503 probable lipopolysaccharide biosynthesis protein BplA-putative NADH-dependent oxidoreductase.
  
     0.751
Acid_1518
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB6199 dehydrogenase homolog.
  
     0.741
Acid_5955
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: sso:SSO3049 dehydrogenase, putative.
  
     0.740
Acid_5692
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.735
Acid_0845
PFAM: PBS lyase HEAT domain protein repeat-containing protein; KEGG: ade:Adeh_2732 PBS lyase heat-like repeat protein.
       0.730
Acid_0701
PFAM: protein of unknown function DUF1080; KEGG: rba:RB3944 hypothetical protein.
  
     0.725
Acid_4908
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB5727 probable oxidoreductase.
  
     0.720
Acid_2627
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.713
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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