Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0874Hypothetical protein; KEGG: gme:Gmet_3488 K+ channel, pore region. (381 aa)    
Predicted Functional Partners:
Acid_2812
PFAM: nitrogen-fixing NifU domain protein; KEGG: chy:CHY_2198 putative FeS assembly protein.
   
    0.744
Acid_7703
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: noc:Noc_2486 SUF system FeS assembly protein.
   
    0.744
Acid_0875
TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pae:PA0355 protease PfpI.
       0.639
Acid_4850
KEGG: eli:ELI_10470 hypothetical protein.
 
     0.632
Acid_4889
KEGG: pac:PPA2220 conserved protein (PRC-barrel domain).
  
    0.596
Acid_7531
KEGG: ade:Adeh_3189 hypothetical protein.
  
    0.539
Acid_3866
PFAM: Asp/Glu racemase; KEGG: rso:RSc0212 putative aspartate racemase protein.
   
    0.530
Acid_5259
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: reu:Reut_A1637 FAD linked oxidase, N-terminal.
  
    0.470
Acid_7532
KEGG: bxe:Bxe_B0005 hypothetical protein.
  
    0.460
Acid_3205
PFAM: FAD linked oxidase domain protein; Berberine/berberine domain protein; KEGG: pol:Bpro_1506 FAD linked oxidase-like.
  
    0.444
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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