STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0876LOC465997; KEGG: ptr:465997 LOC465997. (208 aa)    
Predicted Functional Partners:
Acid_0226
KEGG: mtc:MT0291.4 hypothetical protein.
  
     0.750
Acid_3161
PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein.
  
     0.695
Acid_3791
PFAM: Collagen triple helix repeat; KEGG: gga:395488 macrophage receptor with collagenous structure.
  
     0.675
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
  
     0.661
Acid_1971
KEGG: cef:CE2214 hypothetical protein.
  
     0.649
Acid_6274
KEGG: sco:SCO6735 hypothetical protein.
  
     0.575
Acid_0569
L-fucokinase; PFAM: GHMP kinase; L-fucokinase; GHMP kinase, C terminal domain protein; KEGG: ath:At1g01220 GHMP kinase-related.
  
     0.573
Acid_2445
PFAM: peptidase M20; peptidase M28; KEGG: mxa:MXAN_0100 peptidase, M28D (aminopeptidase ES-62) subfamily.
  
     0.555
Acid_6192
Hypothetical protein; KEGG: CG4050; CG4050 gene product from transcript CG4050-RA CG4050 gene product from transcript CG4050-RB.
  
     0.525
Acid_2154
PFAM: metallophosphoesterase; KEGG: rba:RB5263 hypothetical protein.
  
     0.518
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.