STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0889KEGG: ava:Ava_3619 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Acid_0890
Hypothetical protein.
       0.773
Acid_5960
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: nfa:nfa29520 hypothetical protein.
  
    0.700
Acid_0891
Hydrolase of the HD superfamily (permuted catalytic motifs)-like protein; KEGG: chy:CHY_2144 CRISPR-associated protein, Csm1 family.
       0.550
Acid_0892
TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: ade:Adeh_2234 hypothetical protein.
       0.550
Acid_0893
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: chy:CHY_2142 CRISPR-associated RAMP protein, Csm3 family.
       0.550
Acid_0894
KEGG: syn:slr1753 hypothetical protein.
       0.550
Acid_0895
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: chy:CHY_2140 CRISPR-associated RAMP protein, Csm5 family.
       0.550
Acid_0888
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xac:XAC4174 peptidyl-prolyl cis-trans isomerase.
     
 0.468
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.