STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0891Hydrolase of the HD superfamily (permuted catalytic motifs)-like protein; KEGG: chy:CHY_2144 CRISPR-associated protein, Csm1 family. (484 aa)    
Predicted Functional Partners:
Acid_0893
TIGRFAM: CRISPR-associated RAMP protein, Csm3 family; PFAM: protein of unknown function DUF324; KEGG: chy:CHY_2142 CRISPR-associated RAMP protein, Csm3 family.
 
 
 0.995
Acid_0894
KEGG: syn:slr1753 hypothetical protein.
 
 
 0.995
Acid_0892
TIGRFAM: CRISPR-associated protein, Csm2 family; KEGG: ade:Adeh_2234 hypothetical protein.
  
 
 0.985
Acid_0895
TIGRFAM: CRISPR-associated RAMP protein, Csm5 family; KEGG: chy:CHY_2140 CRISPR-associated RAMP protein, Csm5 family.
  
 
 0.980
Acid_7237
KEGG: rxy:Rxyl_2483 hypothetical protein.
 
  
 0.826
Acid_7603
PFAM: plasmid encoded RepA protein; KEGG: rme:Rmet_2825 plasmid encoded RepA protein.
  
     0.674
Acid_4940
Hypothetical protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
  
     0.668
Acid_6368
KEGG: bpa:BPP0665 hypothetical protein.
  
     0.648
Acid_4389
KEGG: ana:all5120 unknown protein.
  
     0.619
Acid_3523
Hypothetical protein; KEGG: aba:Acid345_2388 Cna B-type protein.
  
     0.605
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.