Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0899PFAM: peptidase M56, BlaR1; KEGG: aba:Acid345_0209 peptidase M56, BlaR1. (615 aa)    
Predicted Functional Partners:
Acid_0898
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_0210 transcriptional repressor, CopY family.
 
 
  0.983
Acid_2643
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_0210 transcriptional repressor, CopY family.
 
 
  0.931
Acid_5488
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_0210 transcriptional repressor, CopY family.
 
 
  0.930
Acid_0097
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_0210 transcriptional repressor, CopY family.
 
 
  0.926
Acid_6347
PFAM: Penicillinase repressor; KEGG: gvi:glr2977 MarR family transcriptional regulatory protein.
 
 
  0.926
Acid_1031
PFAM: Penicillinase repressor; KEGG: gvi:glr2977 MarR family transcriptional regulatory protein.
 
 
  0.923
Acid_4324
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_3889 transcriptional repressor, CopY family.
 
 
  0.890
Acid_4815
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: rba:RB7198 hypothetical protein.
 
 
  0.866
Acid_4820
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: rba:RB7198 hypothetical protein.
 
 
  0.840
Acid_2695
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: aba:Acid345_3889 transcriptional repressor, CopY family.
 
 
  0.828
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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