Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0909PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aba:Acid345_2117 RNA methyltransferase TrmH, group 1. (252 aa)    
Predicted Functional Partners:
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
 
  
 0.696
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
     
 0.641
rpsI
PFAM: ribosomal protein S9; KEGG: aba:Acid345_0562 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
     
 0.554
Acid_0510
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aba:Acid345_0594 biopolymer transport protein ExbD/TolR.
  
     0.470
Acid_0509
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_0595 MotA/TolQ/ExbB proton channel.
  
     0.458
Acid_1282
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aba:Acid345_0150 biopolymer transport protein ExbD/TolR.
  
     0.408
Acid_4064
PFAM: multiple antibiotic resistance (MarC)-related proteins; KEGG: cvi:CV2729 probable multiple antibiotic resistance protein MarC.
 
     0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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