Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0940PFAM: protein of unknown function DUF891; KEGG: xft:PD0967 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Acid_0941
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: xft:PD0968 hypothetical protein.
 
  
 0.963
Acid_4182
KEGG: nwi:Nwi_0731 hypothetical protein.
 
  
 0.842
Acid_4989
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein.
  
 
 0.820
Acid_1679
KEGG: mta:Moth_0618 hypothetical protein.
  
     0.573
Acid_0970
Transcriptional regulator, Fis family; KEGG: gme:Gmet_2961 hypothetical protein.
 
     0.479
Acid_0937
Hypothetical protein.
       0.423
Acid_0938
Hypothetical protein.
       0.423
Acid_0939
Hypothetical protein.
       0.423
Acid_0832
PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu1618 hypothetical protein.
  
     0.420
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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