Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0941Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: xft:PD0968 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Acid_0940
PFAM: protein of unknown function DUF891; KEGG: xft:PD0967 hypothetical protein.
 
  
 0.963
Acid_4183
PFAM: protein of unknown function DUF891; KEGG: nwi:Nwi_0732 protein of unknown function DUF891.
 
  
 0.842
Acid_4182
KEGG: nwi:Nwi_0731 hypothetical protein.
  
     0.727
Acid_1679
KEGG: mta:Moth_0618 hypothetical protein.
  
     0.678
Acid_0832
PFAM: GCN5-related N-acetyltransferase; KEGG: plu:plu1618 hypothetical protein.
  
     0.557
Acid_1299
PFAM: GCN5-related N-acetyltransferase; KEGG: hch:HCH_05627 histone acetyltransferase HPA2/related acetyltransferase.
  
     0.526
Acid_1714
PFAM: protein of unknown function UPF0150; KEGG: rpb:RPB_1422 protein of unknown function UPF0150.
  
     0.505
Acid_0970
Transcriptional regulator, Fis family; KEGG: gme:Gmet_2961 hypothetical protein.
 
     0.490
vapC-5
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.462
Acid_0833
KEGG: eba:p1B137 conserved hypothetical protein, with unknown function.
  
     0.443
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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