Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0944KEGG: ava:Ava_3240 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Acid_0945
KEGG: aba:Acid345_4244 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
       0.486
Acid_0942
PFAM: Integrase, catalytic region; KEGG: gvi:glr0077 putative transposase.
       0.482
Acid_0943
PFAM: transposase IS3/IS911 family protein; KEGG: gvi:glr0076 putative transposase.
       0.482
Acid_0946
KEGG: aba:Acid345_4245 tetratricopeptide repeat protein.
       0.461
Acid_0947
Conserved hypothetical protein; KEGG: aba:Acid345_4247 TPR repeat protein.
       0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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