Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0964PFAM: Late embryogenesis abundant protein; KEGG: aba:Acid345_2264 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Acid_6292
KEGG: bth:BT1252 hypothetical protein.
  
     0.675
Acid_0963
KEGG: aba:Acid345_2265 hypothetical protein.
       0.661
Acid_1644
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.656
Acid_5882
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.644
Acid_3638
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.641
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.628
Acid_7005
KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.605
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.558
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.554
Acid_0035
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.553
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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