STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0966KEGG: rba:RB347 ferredoxin, 2Fe-2S. (120 aa)    
Predicted Functional Partners:
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
 
 
 0.923
Acid_0183
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sth:STH2056 nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.906
Acid_2928
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: gka:GK1866 assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.906
Acid_5019
PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: dps:DP2208 probable NADH dehydrogenase (ubiquinone) I, chain E.
 
 
 0.898
Acid_0112
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; KEGG: aba:Acid345_1312 NADH-quinone oxidoreductase, E subunit.
 
 
 0.890
Acid_0119
KEGG: aba:Acid345_1304 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
  
 0.804
Acid_2320
KEGG: aba:Acid345_1295 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
  
 0.804
Acid_5689
KEGG: aba:Acid345_1295 proton-translocating NADH-quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I).
  
  
 0.804
Acid_0968
PFAM: aldehyde dehydrogenase; KEGG: gka:GK1411 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.783
Acid_0967
2-keto-3-deoxy-D-arabinonate dehydratase; PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: sso:SSO3118 hypothetical protein.
       0.773
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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