STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0970Transcriptional regulator, Fis family; KEGG: gme:Gmet_2961 hypothetical protein. (93 aa)    
Predicted Functional Partners:
Acid_0688
PFAM: plasmid maintenance system killer; KEGG: eba:ebA1560 plasmid maintenance system killer protein.
   
 
 0.804
Acid_2331
PFAM: plasmid maintenance system killer; KEGG: dvu:DVU1729 killer protein, putative.
   
 
 0.804
Acid_3908
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
   
 0.526
Acid_4330
KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator.
 
   
 0.510
Acid_0941
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: xft:PD0968 hypothetical protein.
 
     0.495
Acid_0940
PFAM: protein of unknown function DUF891; KEGG: xft:PD0967 hypothetical protein.
 
     0.481
Acid_4331
KEGG: sde:Sde_2786 hypothetical protein.
 
   
 0.454
Acid_7918
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rru:Rru_A3065 transcriptional regulator, XRE family.
 
   
 0.424
Acid_2061
PFAM: HipA domain protein; KEGG: neu:NE1310 possible HipA protein.
 
   
 0.415
Acid_1679
KEGG: mta:Moth_0618 hypothetical protein.
  
     0.411
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.