Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0972KEGG: aba:Acid345_1518 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Acid_0973
PFAM: protein of unknown function DUF477; KEGG: aba:Acid345_1517 protein of unknown function DUF477.
 
     0.875
Acid_0971
PFAM: LemA family protein; KEGG: aba:Acid345_1519 LemA.
 
     0.862
Acid_4177
KEGG: aba:Acid345_3691 hypothetical protein.
  
     0.583
Acid_6292
KEGG: bth:BT1252 hypothetical protein.
  
     0.580
Acid_2434
PFAM: Methyltransferase type 11; KEGG: nfa:nfa12530 hypothetical protein.
  
     0.579
Acid_6480
KEGG: aba:Acid345_1037 hypothetical protein.
  
     0.536
Acid_5078
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.519
Acid_0548
PFAM: O-antigen polymerase; KEGG: dvu:DVUA0048 exopolysaccharide production protein, putative.
 
     0.512
Acid_6436
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rba:RB8167 hypothetical protein.
  
    0.499
Acid_5383
Hypothetical protein; KEGG: aba:Acid345_1549 TonB-dependent receptor.
  
     0.440
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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