Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Acid_0975PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein, putative related to sulfatases. (479 aa)    
Predicted Functional Partners:
Acid_0974
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB2688 hypothetical protein-transmembrane prediction.
 
     0.946
Acid_0858
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB11276 hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.775
Acid_1145
PFAM: protein of unknown function DUF1549; KEGG: rba:RB6288 hypothetical protein-signal peptide prediction.
  
     0.775
Acid_3952
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
Acid_4059
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB4803 hypothetical protein-signal peptide prediction.
  
     0.775
Acid_6186
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB2845 hypothetical protein-transmembrane prediction.
  
     0.775
Acid_6290
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; SMART: Laminin G; KEGG: rba:RB7229 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
Acid_6541
PFAM: protein of unknown function DUF1549; KEGG: rba:RB8437 similar to cis/trans isomerase.
  
     0.775
Acid_6547
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB714 probable chromosome segregation protein.
  
     0.775
Acid_7665
PFAM: protein of unknown function DUF1549; KEGG: rba:RB9593 probable S-layer related protein [precursor].
  
     0.775
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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