Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_0976KEGG: reu:Reut_A1751 hypothetical protein. (180 aa)    
Predicted Functional Partners:
Acid_0977
KEGG: reu:Reut_A1752 putative heat-shock chaperone protein; Belongs to the heat shock protein 70 family.
 
     0.934
Acid_0981
PFAM: Heat shock protein 70; KEGG: bur:Bcep18194_B2544 molecular chaperone-like.
 
     0.790
Acid_0974
PFAM: Planctomycete cytochrome C; protein of unknown function DUF1549; KEGG: rba:RB2688 hypothetical protein-transmembrane prediction.
       0.533
Acid_0975
PFAM: protein of unknown function DUF1501; KEGG: rba:RB9886 hypothetical protein, putative related to sulfatases.
       0.533
Acid_0401
Anaerobic dehydrogenases typically selenocysteine-containing-like protein; KEGG: dvu:DVU0694 molybdopterin oxidoreductase, molybdopterin-binding subunit, putative; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
     0.475
Acid_7789
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; Belongs to the bacterial secretin family.
  
     0.431
Acid_1057
Hypothetical protein; KEGG: gme:Gmet_1668 putative transmembrane protein.
  
     0.404
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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