Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0979KEGG: rba:RB344 probable xanthan lyase. (536 aa)    
Predicted Functional Partners:
Acid_4005
Hypothetical protein; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase.
 
     0.731
Acid_4275
KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.698
Acid_1801
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.697
Acid_2874
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.675
Acid_3711
KEGG: rba:RB8866 hypothetical protein.
  
     0.658
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
    0.658
Acid_3533
KEGG: rba:RB6799 hypothetical protein-transmembrane prediction.
  
     0.656
Acid_4452
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12897 hypothetical protein-signal peptide prediction.
  
     0.645
Acid_1749
KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.632
Acid_0980
Hypothetical protein; KEGG: pfl:PFL_3520 outer membrane autotransporter barrel domain protein.
       0.631
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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