Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
Acid_0986PFAM: glycosyl transferase, family 39; KEGG: aba:Acid345_1201 tetratricopeptide repeat protein. (523 aa)    
Predicted Functional Partners:
Acid_0987
Anthranilate synthase, component II / anthranilate synthase, component I; TIGRFAM: glutamine amidotransferase of anthranilate synthase; anthranilate synthase; PFAM: glutamine amidotransferase class-I; Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; KEGG: ava:Ava_4890 glutamine amidotransferase of anthranilate synthase.
       0.776
Acid_0985
PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; KEGG: ade:Adeh_3603 peptidyl-prolyl cis-trans isomerase, cyclophilin type.
       0.773
Acid_0988
KEGG: aba:Acid345_2903 hypothetical protein.
       0.686
Acid_0984
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
       0.675
Acid_0989
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ana:all3753 probable short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.580
Acid_0990
Hypothetical protein.
       0.580
Acid_2899
Hypothetical protein; KEGG: hch:HCH_06378 predicted ATPase.
 
     0.457
Acid_0991
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: gsu:GSU1839 hydrolase, haloacid dehalogenase-like family.
       0.432
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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